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Bacterial molecular networks : methods and protocols
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| 目次 | Bacterial molecular networks : bridging the gap between functional genomics and dynamical modelling Jacques van Helden, Ariane Toussaint, and Denis Thieffry Bacterial interactomes : from interactions to networks Emmanuelle Bouveret and Christine Brun From bacterial to microbial ecosystems (metagenomics) Shannon J. Williamson and Shibu Yooseph Prokaryote genome fluidity : toward a system approach of the mobilome Ariane Toussaint and Mick Chandler Reticulate classification of mosaic microbial genomes using NeAT website Gipsi Lima-Mendez From metabolic reactions to networks and pathways Masanori Arita Predicting metabolic pathways by sub-network extraction Karoline Faust and Jacques van Helden Directed module detection in a large-scale expression compendium Qiang Fu ... [et al.] Using phylogenetic profiles to predict functional relationships Matteo Pellegrini Extracting regulatory networks of Escherichia coli from RegulonDB Heladia Salgado ... [et al.] Browsing metabolic and regulatory networks with BioCyc Mario Latendresse, Suzanne Paley, and Peter D. Karp Algorithms for systematic identification of small subgraphs Joseph Geraci, Geoffrey Liu, and Igor Jurisica The degree distribution of ntworks : statistical model selection William P. Kelly, Piers J. Ingram, and Michael P.H. Stumpf MAVisto : a tool for biological network motif analysis Henning Schwöbbermeyer and Röbbe Wünschiers Using MCL to extract clusters from networks Stijn van Dongen and Cei Abreu-Goodger Protein complex prediction with RNSC Andrew D. King, Nataša Pržulj, and Igor Jurisica Network analysis and protein function prediction with the PRODISTIN web site Anaïs Baudot, Ouissem Souiai, and Christine Brun Using NeAT Toolbox to compare networks to networks, clusters to clusters, and network to clusters Sylvain Brohée Analyzing biological data using R : methods for graphs and networks Nolwenn Le Meur and Robert Gentleman Detecting structural invariants in biological reaction networks Jörn Behre ... [et al.] Petri nets in Snoopy : a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks Wolfgang Marwan, Christian Rohr, and Monika Heiner Genetic Network Analyzer : a tool for the qualitative modeling and simulation of bacterial regulatory networks Grégory Batt ... [et al.] Logical modelling of gene regulatory networks with GINsim Claudine Chaouiya, Aurélien Naldi, and Denis Thieffry Modelling the evolution of mutualistic symbioses Maren L. Friesen and Emily I. Jones Modelling the onset of virulence in pthogenic bacteria Wilfred D. Kepseu ... [et al.] Spatial and stochastic cellular modeling with the Smoldyn Simulator Steven S. Andrews.続きを見る |
| 本文を見る | Springer Nature Complete Protocols: 2012 |
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| 登録日 | 2023.09.29 |
| 更新日 | 2024.01.30 |