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Transcriptional regulation : methods and protocols
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| 目次 | Genome-wide in vivo cross-linking of sequence-specific transcription factors Xiao-Yong li and Mark D. Biggin Characterization of complex regulatory networks and identification of promoter regulatory elements in yeast : "in silico" And "wet-lab" approaches Nuno P. Mira, Miguel C. Teixeira, and Isabel Sá-Correia Electrophoretic mobility shift assay analysis of NF[kappa]B transcriptional regulation by nuclear I[kappa]B[alpha] Ashish Juvekar ... [et al.] Probing endogenous RNA polymerase II pre-initiation complexes by electrophoretic mobility shift assay Emmanuelle Wilhelm, Christopher Takacs, and Brendan Bell Elucidating protein : DNA complex by oligonucleotide DNA affinity purification Teddy T.C. Yang and Chi-Wing Chow Chromatin immunoprecipitation assay as a tool for analyzing transcription factor activity Padmaja Gade and Dhan V. Kalvakolanu Two-step cross-linking for analysis of protein-chromatin interactions Bing Tian, Jun Yan, and Allan R. Brasier Chromatin immunoprecipitation analysis of NF[kappa]B transcriptional regulation by nuclear I[kappa]B[alpha] in human macrophages Sitharam Ramaswami ... [et al.] In vivo ChIP for the analysis of microdissected tissue samples Chris Murgatroyd, Anke Hoffmann, and Dietmar Spengler Quantification of protein-DNA interactions by in vivo chromatin immunoprecipitation in yeast Amparo Pascual-Ahuir and Markus Proft Mapping protein-DNA interactions using ChIP-sequencing Charles E. Massie and Ian G. Mils ChIP and re-ChIP assays : investigating interactions between regulatory proteins, histone modifications, and the DNA sequences to which they bind Agnieszka D. Truax and Susanna F. Greer Transcriptional regulation of genes via hypoxia-inducible factor Olga Roche and Michael Ohh Exchange protein directly activated by cyclic AMP-1-regulated recruitment of CCAAT/enhancer-binding proteins to the suppressor of cytokine signaling-3 promoter William A. Sands ... [et al.] Computational analysis of promoter elements and chromatin features in yeast John J. Wyrick Chromatin affinity purification Ryoko Harada and Alain Nepveu Determination of histone acetylation status by chromatin immunoprecipitation Luciano Galdieri, John Moon, and Ales Vancura Immunostaining of Drosophila polytene chromosomes to investigate recruitment of chromatin-binding proteins Magdalena Murawska and Alexander Brehm Detection of transcriptional activators, co-activators, and chromatin remodeling by chromatin immunoprecipitation coupled with real-time PCR Tamara Y. Erkina and Alexandre M. Erkine Chromatin endogenous cleavage and psoralen crosslinking assays to analyze rRNA gene chromatin in vivo Joachim Griesenbeck ... [et al.] UV-induced DNA damage and DNA repair in ribosomal genes chromatin Julie Pelloux ... [et al.] Analysis of SUC2 promoter structure by nucleosome scanning Jennifer Chang and Ales Vancura Chromatin immunoprecipitation of mouse embryos Anne K. Voss ... [et al.] Chromatin immunoprecipitation in mouse hippocampal cells and tissues Badi Sri Sailaja, Takumi Takizawa, and Eran Meshorer Approaches for studying nucleosome movement by ATP-dependent chromatin remodeling complexes Swetansu K. Hota and Blaine Bartholomew Mapping protein-DNA and protein-protein interactions of ATP-dependent chromatin remodelers Swetansu K. Hota ... [et al.] Evaluation of histone-modifying enzymes in stem cell populations Leanne Stalker and Christopher Wynder Purification of multiprotein histone acetyltransferase complexes Yuan-Liang Wang, Francesco Faiola, and Ernest Martinez Reconstitution of active and stoichiometric multisubunit lysine acetyltransferase complexes in insect cells Kezhi Yan ... [et al.] Affinity purification of MLL3/MLL4 histone H3K4 methyltransferase complex Young-Wook Cho, SunHwa Hong, and Kai Ge Methods for analyzing histone citrullination in chromatin structure and gene regulation Pingxin Li, Jing Hu, and Yanming Wang Analysis of mRNA abundance and stability by ribonuclease protection assay Cristina Romero-López ... [et al.] Array-based nuclear run-on analysis Jinshui Fan ... [et al.] In vivo run-on assays to monitor nascent precursor RNA transcripts Piergiorgio Percipalle and Emilie Louvet Genome wide full-length transcript analysis using 5' and 3' paired-end-tag next generation sequencing (RNA-PET) Xiaoan Ruan and Yijun Ruan Analysis of co-transcriptional RNA processing by RNA- ChIP assay Danielle Bittencourt and Didier Auboeuf Quantitative analysis of transcription elongation by RNA polymerase I in vitro David Alan Schneider Detection and characterization of transcription termination Ghada Ghazal, Jules Gagnon, and Sherif Abou Elela Promoter-associated noncoding RNA from the CCND1 promoter Xiaoyuan Song ... [et al.]続きを見る |
| 本文を見る | Springer Nature Complete Protocols: 2012 |
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| 登録日 | 2023.09.29 |
| 更新日 | 2024.01.30 |